Ariadne: Results view

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Search parameter
Nucleotide mapping

Score histgram

Identification summary

Oligonucleotide-RNA matrix

MS/MS ion search

Matched nucleotide list(overall)


Search parameter

mgf_file: 160427tRNAphe50f04_spice11.mgf
database: Sc_tRNA_modomics.fasta
Enzyme_pattern_file: RNaseT1.txt

max_mods: 4
max_missed_cleavages: 2
fp: 5pP
tp: OH3p
Mass_tolerance: 10
MS2_tolerance: 20
mass_table: default
base_number: 3
reject_length_for_mapping: 3

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Nucleotide mapping

Score histgram


Identification summary
RNA desc score matched sum matched_positions matched_sequences
20_3 tRNA | Phe | G 35.24 10 45 5_10, 11_15, 16_19, 27_30, 31_42, 46_51, 54_57, 58_65, 66_71, 72_76 AUUUAG, CUCAG, UUGG, CCAG, ACUGAAGAUCUG, GUCCUG, UUCG, AUCCACAG, AAUUCG, CACCA
31_0 tRNA | Tyr | G 34.32 10 51 1_6, 11_15, 16_19, 20_25, 29_32, 37_45, 56_59, 60_64, 65_70, 75_78 CUCUCG, CCAAG, UUGG, UUUAAG, CAAG, UAAAUCUUG, UUCG, ACUCG, CCCCCG, ACCA
21_3 tRNA | Phe | G 27.53 9 46 5_10, 11_15, 16_19, 27_30, 31_42, 46_51, 54_57, 58_65, 68_71, 72_76 ACUUAG, CUCAG, UUGG, CCAG, ACUGAAGAUCUG, GUCCUG, UUCG, AUCCACAG, UUCG, CACCA
12_5 tRNA | Ile | A 12.80 3 9 16_19, 20_24, 26_30 UUGG, UUAAG, CACCG
4_3 tRNA | Asn | G 12.42 3 7 11_15, 16_19, 20_24 CCAAG, UUGG, UUAAG
24_8 tRNA | Ser | U 10.13 4 23 19_23, 31_42, 43_46, 53_56 UUAAG, ACUUGAAAUCUG, UUGG, CCCG
6_14 tRNA | Cys | G 9.31 3 12 42_45, 53_56, 57_64 UUGG, UUCG, AUCCUGAG
28_3 tRNA | Thr | A 8.65 2 4 11_15, 16_19 CCAAG, UUGG
29_3 tRNA | Thr | A 8.65 2 4 11_15, 16_19 CCAAG, UUGG
14_10 tRNA | Leu | U 8.04 2 9 19_24, 32_37 UUUAAG, AUUUAG
18_2 tRNA | Lys | 3 7.52 3 13 11_15, 16_19, 27_30 CUCAG, UUGG, UUCG
15_19 tRNA | Leu | C 6.88 2 5 57_60, 63_66 CAAG, UUCG
14_20 tRNA | Leu | U 6.38 2 6 57_60, 63_66 CAAG, UUCG
23_8 tRNA | Ser | C 6.38 2 10 19_23, 31_35 UUAAG, ACUCG
27_15 tRNA | Ser | G 6.21 1 2 41_46 CAUUGG
41_16 tRNA | Tyr | G 6.02 1 1 49_54 ACUUAG
46_18 tRNA | Pro | U 6.02 1 1 72_75 ACCA
1_26 tRNA | Ala | A 5.61 1 1 65_69 ACUCG
5_14 tRNA | Asp | G 5.61 1 1 42_45 CCAG
5_0 tRNA | Asp | G 5.33 1 1 1_4 UCCG
7_0 tRNA | Glu | U 5.33 1 1 1_4 UCCG
23_18 tRNA | Ser | C 5.33 1 1 53_56 CCCG
25_17 tRNA | Ser | I 5.33 1 1 53_56 CCCG
30_19 tRNA | Trp | C 5.33 1 1 64_67 UCCG
26_17 tRNA | Ser | I 5.11 2 9 53_56, 63_66 CCCG, UUCG
4_13 tRNA | Asn | G 5.10 1 1 43_46 CAAG
8_2 tRNA | Gly | G 5.10 1 1 4_7 CAAG
16_18 tRNA | Leu | U 4.93 3 19 44_47, 55_58, 65_68 UUGG, UCCG, UUCG
13_4 tRNA | Ile | U 4.92 1 1 11_15 CUCAG
15_14 tRNA | Leu | C 4.92 1 1 39_43 CUCAG
19_3 tRNA | Met | C 4.92 1 1 11_15 CUCAG
25_8 tRNA | Ser | I 4.77 1 1 19_23 UUAAG
26_8 tRNA | Ser | I 4.77 1 1 19_23 UUAAG
27_8 tRNA | Ser | G 4.77 1 1 19_23 UUAAG
8_11 tRNA | Gly | G 4.32 1 1 40_43 UUGG
16_5 tRNA | Leu | U 4.32 1 1 7_10 UUGG
17_2 tRNA | Lys | C 4.32 1 1 7_10 UUGG
32_19 tRNA | Val | U 4.32 1 1 67_70 UUGG
33_17 tRNA | Val | C 4.32 1 1 66_69 UUGG
8_22 tRNA | Gly | G 4.31 1 1 69_73 CACCA
10_21 tRNA | His | G 4.31 1 1 72_76 CACCA
11_21 tRNA | His | G 4.31 1 1 72_76 CACCA
13_20 tRNA | Ile | U 4.31 1 1 72_76 CACCA
19_20 tRNA | Met | C 4.31 1 1 72_76 CACCA
28_20 tRNA | Thr | A 4.31 1 1 72_76 CACCA
29_21 tRNA | Thr | A 4.31 1 1 72_76 CACCA
37_17 tRNA | Leu | ! 4.31 1 1 81_85 CACCA
43_14 tRNA | Phe | G 4.31 1 1 69_73 CACCA
1_23 tRNA | Ala | A 3.28 1 1 54_57 UUCG
2_16 tRNA | Arg | U 3.28 1 1 53_56 UUCG
7_14 tRNA | Glu | U 3.28 1 1 53_56 UUCG
8_16 tRNA | Gly | G 3.28 1 1 51_54 UUCG
9_19 tRNA | Gly | U 3.28 1 1 53_56 UUCG
10_14 tRNA | His | G 3.28 1 1 54_57 UUCG
11_15 tRNA | His | G 3.28 1 1 54_57 UUCG
12_19 tRNA | Ile | A 3.28 1 1 55_58 UUCG
17_17 tRNA | Lys | C 3.28 1 1 54_57 UUCG
18_16 tRNA | Lys | 3 3.28 1 1 54_57 UUCG
19_16 tRNA | Met | C 3.28 1 1 54_57 UUCG
27_22 tRNA | Ser | G 3.28 1 1 63_66 UUCG
32_16 tRNA | Val | U 3.28 1 1 55_58 UUCG
33_14 tRNA | Val | C 3.28 1 1 54_57 UUCG
34_15 tRNA | Val | A 3.28 1 1 55_58 UUCG
40_11 tRNA | Ser | G 3.28 1 1 62_65 UUCG
43_10 tRNA | Phe | G 3.28 1 1 51_54 UUCG
44_11 tRNA | Gly | N 3.28 1 1 53_56 UUCG
45_14 tRNA | His | G 3.28 1 1 53_56 UUCG
46_15 tRNA | Pro | U 3.28 1 1 53_56 UUCG
52_10 tRNA | Trp | ! 3.28 1 1 52_55 UUCG
41_6 tRNA | Tyr | G 1.82 1 6 17_20, 24_27 UUGG, UUGG

Oligonucleotide-RNA matrix
  RNA 20_3 31_0 21_3 12_5 4_3 24_8 6_14 28_3 29_3 14_10 18_2 15_19 14_20 23_8 27_15 41_16 46_18 1_26 5_14 5_0 7_0 23_18 25_17 30_19 26_17 4_13 8_2 16_18 13_4 15_14 19_3 25_8 26_8 27_8 8_11 16_5 17_2 32_19 33_17 8_22 10_21 11_21 13_20 19_20 28_20 29_21 37_17 43_14 1_23 2_16 7_14 8_16 9_19 10_14 11_15 12_19 17_17 18_16 19_16 27_22 32_16 33_14 34_15 40_11 43_10 44_11 45_14 46_15 52_10 41_6
  rank 1 2 3 4 5 6 7 8 8 10 11 12 13 13 15 16 16 18 18 20 20 20 20 20 25 26 26 28 29 29 29 32 32 32 35 35 35 35 35 40 40 40 40 40 40 40 40 40 49 49 49 49 49 49 49 49 49 49 49 49 49 49 49 49 49 49 49 49 49 70
  score 35.24 34.32 27.53 12.80 12.42 10.13 9.31 8.65 8.65 8.04 7.52 6.88 6.38 6.38 6.21 6.02 6.02 5.61 5.61 5.33 5.33 5.33 5.33 5.33 5.11 5.10 5.10 4.93 4.92 4.92 4.92 4.77 4.77 4.77 4.32 4.32 4.32 4.32 4.32 4.31 4.31 4.31 4.31 4.31 4.31 4.31 4.31 4.31 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 3.28 1.82
  length 72 78 72 15 14 38 23 9 9 19 20 10 10 17 6 6 4 5 4 4 4 4 4 4 14 4 4 25 5 5 5 5 5 5 4 4 4 4 4 5 5 5 5 5 5 5 5 5 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 11
oligonucleotide q#                                                                                                                                            
UUGG 19 1 1 1 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
UUCG 1,13 1 1 2 0 0 0 1 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0
CUCAG 2 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CCAG 3 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CACCA 16 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GUCCUG 4,30 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AUCCACAG 8,10,170,408 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ACUGAAGAUCUG 9 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AUUUAG 6,151,157 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AAUUCG 5,78 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CCAAG 25 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
UUUAAG 21 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CAAG 27 0 1 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ACUCG 23 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ACCA 150 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CUCUCG 34 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
UAAAUCUUG 35 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CCCCCG 22 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ACUUAG 14,90,157 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
UUAAG 38 0 0 0 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CACCG 59 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CCCG 50 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ACUUGAAAUCUG 91 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AUCCUGAG 69 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CAUUGG 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
UCCG 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0


MS/MS ion search

Matched nucleotide list(overall)
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