Ariadne: Results view


Search parameter
Nucleotide mapping

Score histgram

Identification summary

Oligonucleotide-RNA matrix

MS/MS ion search

Matched nucleotide list(overall)

Browse search log

Search parameter

more


Nucleotide mapping

Score histgram

Theoretical threshold: 37.68(5%) 41.74(1%)
Empirical threshold: 73.56(5%) 81.59(1%)
Identidication summary
RNAdescscorematchedsummatched_positionmatched_sequences
143_5933299gi|224514933|ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig, GRCh37.p5 Primary Assembly92.43121231053325_31053330, 31053331_31053337, 31053411_31053417, 31053423_31053432, 31053436_31053443, 31053454_31053461, 31053466_31053471, 31053508_31053519, 31053554_31053559, 31053560_31053567, 31053574_31053581, 31053586_31053591UCCCAG, CUACUCG, CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG, CAACAUAG, ACCCCG
144_12035002gi|224514933|ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig, GRCh37.p5 Primary Assembly_r92.43121256960001_56960006, 56960007_56960013, 56960087_56960093, 56960099_56960108, 56960112_56960119, 56960130_56960137, 56960142_56960147, 56960184_56960195, 56960230_56960235, 56960236_56960243, 56960250_56960257, 56960262_56960267UCCCAG, CUACUCG, CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG, CAACAUAG, ACCCCG
144_12036845gi|224514933|ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig, GRCh37.p5 Primary Assembly_r76.16101156968936_56968941, 56968942_56968948, 56969034_56969043, 56969047_56969054, 56969065_56969072, 56969077_56969082, 56969119_56969130, 56969165_56969170, 56969171_56969178, 56969185_56969192UCCCAG, CUACUCG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG, CAACAUAG
491_1863337gi|224514694|ref|NT_008413.18| Homo sapiens chromosome 9 genomic contig, GRCh37.p5 Primary Assembly67.70889432087_9432092, 9432093_9432099, 9432173_9432179, 9432185_9432194, 9432198_9432205, 9432216_9432223, 9432228_9432233, 9432270_9432281UCCCAG, CUACUCG, CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, UCAAAACUCCCG
361_3308216gi|224515018|ref|NT_022517.18| Homo sapiens chromosome 3 genomic contig, GRCh37.p5 Primary Assembly66.708915720049_15720054, 15720055_15720061, 15720135_15720141, 15720147_15720156, 15720160_15720167, 15720178_15720185, 15720190_15720195, 15720232_15720243UCCCAG, CUACUCG, CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, UCAAAACUCCCG
362_3881965gi|224515018|ref|NT_022517.18| Homo sapiens chromosome 3 genomic contig, GRCh37.p5 Primary Assembly_r48.8782018033527_18033532, 18033533_18033539, 18033610_18033617, 18033807_18033816, 18033850_18033855, 18033892_18033903, 18033938_18033943, 18033944_18033951, 18033958_18033965UCCCAG, CUACUCG, CACUCCAG, CAUCAAUAUG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG, CAACAUAG
435_5146560gi|224514841|ref|NT_025741.15| Homo sapiens chromosome 6 genomic contig, GRCh37.p5 Primary Assembly48.125627235973_27235979, 27235985_27235994, 27235998_27236005, 27236028_27236033, 27236070_27236081CACUAAG, CAUCAAUAUG, ACCUCCCG, CCUAAG, UCAAAACUCCCG
448_9289486gi|224514692|ref|NT_007933.15| Homo sapiens chromosome 7 genomic contig, GRCh37.p5 Primary Assembly_r46.3971146778792_46778797, 46778798_46778804, 46778890_46778899, 46778903_46778910, 46778920_46778927, 46778932_46778937, 46779020_46779025UCCCAG, CUACUCG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, CCACUG
277_1422701gi|224514621|ref|NT_005334.16| Homo sapiens chromosome 2 genomic contig, GRCh37.p5 Primary Assembly46.10676606138_6606143, 6606224_6606230, 6606236_6606245, 6606249_6606256, 6606267_6606274, 6606279_6606284UCCCAG, CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG
314_4009805gi|224514629|ref|NT_011362.10| Homo sapiens chromosome 20 genomic contig, GRCh37.p5 Primary Assembly_r46.1061117703622_17703627, 17703720_17703729, 17703733_17703740, 17703763_17703768, 17703805_17703816, 17703851_17703856UCCCAG, CAUCAAUAUG, ACCUCCCG, CCUAAG, UCAAAACUCCCG, CCACUG
131_4589305gi|224514830|ref|NT_024524.14| Homo sapiens chromosome 13 genomic contig, GRCh37.p5 Primary Assembly45.1981822676039_22676044, 22676125_22676131, 22676137_22676146, 22676168_22676175, 22676180_22676185, 22676268_22676273, 22676274_22676281, 22676409_22676416UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
314_2690741gi|224514629|ref|NT_011362.10| Homo sapiens chromosome 20 genomic contig, GRCh37.p5 Primary Assembly_r44.756812038966_12038972, 12038978_12038987, 12038991_12038998, 12039009_12039016, 12039021_12039026, 12039109_12039114CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, CCACUG
533_15572gi|51467290|ref|NT_035014.4| Homo sapiens chromosome 9 genomic contig, GRCh37.p5 Primary Assembly44.106952620_52625, 52707_52713, 52719_52728, 52732_52739, 52750_52757, 52762_52767UCCCAG, CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG
241_2788575gi|224514627|ref|NT_011109.16| Homo sapiens chromosome 19 genomic contig, GRCh37.p5 Primary Assembly43.5361012128121_12128127, 12128164_12128171, 12128176_12128181, 12128218_12128229, 12128264_12128269, 12128284_12128291CACUAAG, ACCACCAG, CCUAAG, UCAAAACUCCCG, CCACUG, CAACAUAG
396_12776619gi|224514665|ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig, GRCh37.p5 Primary Assembly_r42.9661068035423_68035429, 68035435_68035444, 68035448_68035455, 68035470_68035475, 68035571_68035576, 68035591_68035598CACUAAG, CAUCAAUAUG, ACCUCCCG, CCUAAG, CCACUG, CAACAUAG
354_6441298gi|224514636|ref|NT_011520.12| Homo sapiens chromosome 22 genomic contig, GRCh37.p5 Primary Assembly_r42.8171626889592_26889597, 26889688_26889697, 26889701_26889708, 26889719_26889726, 26889731_26889736, 26889825_26889832, 26889839_26889846UCCCAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, CACUCCAG, CAACAUAG
240_1722910gi|224514626|ref|NT_011295.11| Homo sapiens chromosome 19 genomic contig, GRCh37.p5 Primary Assembly_r42.157137610216_7610221, 7610222_7610228, 7610301_7610307, 7610313_7610322, 7610442_7610447, 7610448_7610455, 7610462_7610469UCCCAG, CUACUCG, CACUAAG, CAUCAAUAUG, CCACUG, CACUCCAG, CAACAUAG
239_1464873gi|224514626|ref|NT_011295.11| Homo sapiens chromosome 19 genomic contig, GRCh37.p5 Primary Assembly41.447165957657_5957664, 5957736_5957741, 5957821_5957827, 5957833_5957842, 5957864_5957871, 5957876_5957881, 5957973_5957980CAACAUAG, UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CACUCCAG
177_539227gi|224514945|ref|NT_010718.16| Homo sapiens chromosome 17 genomic contig, GRCh37.p5 Primary Assembly41.137142187633_2187638, 2187719_2187725, 2187731_2187740, 2187774_2187779, 2187862_2187867, 2187868_2187875, 2187882_2187889UCCCAG, CACUAAG, CAUCAAUAUG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
281_9794982gi|224515010|ref|NT_022184.15| Homo sapiens chromosome 2 genomic contig, GRCh37.p5 Primary Assembly41.0671148565797_48565802, 48565803_48565809, 48565884_48565890, 48565909_48565916, 48565935_48565940, 48566023_48566028, 48566029_48566036UCCCAG, CUACUCG, CACUAAG, ACCUCCCG, CCUAAG, CCACUG, CACUCCAG
181_1019428gi|224514948|ref|NT_010799.15| Homo sapiens chromosome 17 genomic contig, GRCh37.p5 Primary Assembly40.928194582408_4582413, 4582470_4582475, 4582556_4582562, 4582581_4582588, 4582611_4582616, 4582699_4582704, 4582705_4582712, 4582719_4582726UCCAUG, UCCCAG, CACUAAG, ACCUCCCG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
31_6506552gi|224514980|ref|NT_004487.19| Homo sapiens chromosome 1 genomic contig, GRCh37.p5 Primary Assembly40.7561331358072_31358078, 31358156_31358162, 31358181_31358188, 31358253_31358264, 31358299_31358304, 31358305_31358312CUACUCG, CACUAAG, ACCUCCCG, UCAAAACUCCCG, CCACUG, CACUCCAG
413_2764719gi|224514619|ref|NT_006713.15| Homo sapiens chromosome 5 genomic contig, GRCh37.p5 Primary Assembly40.1561214429812_14429821, 14429825_14429832, 14429840_14429847, 14429852_14429857, 14429940_14429945, 14429960_14429967CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, CCACUG, CAACAUAG
368_517098gi|224514999|ref|NT_029928.13| Homo sapiens chromosome 3 genomic contig, GRCh37.p5 Primary Assembly_r39.696102314543_2314549, 2314555_2314564, 2314586_2314593, 2314676_2314681, 2314682_2314689, 2314696_2314703CACUAAG, CAUCAAUAUG, ACCACCAG, CCACUG, CACUCCAG, CAACAUAG
239_1465940gi|224514626|ref|NT_011295.11| Homo sapiens chromosome 19 genomic contig, GRCh37.p5 Primary Assembly39.447185961914_5961921, 5961998_5962003, 5962083_5962089, 5962095_5962104, 5962125_5962132, 5962137_5962142, 5962234_5962241CAACAUAG, UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CACUCCAG
183_5408882gi|224514953|ref|NT_010783.15| Homo sapiens chromosome 17 genomic contig, GRCh37.p5 Primary Assembly39.3561224251517_24251523, 24251529_24251538, 24251560_24251567, 24251572_24251577, 24251662_24251669, 24251676_24251683CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CACUCCAG, CAACAUAG
309_683915gi|27501067|ref|NT_011387.8| Homo sapiens chromosome 20 genomic contig, GRCh37.p5 Primary Assembly39.338193014767_3014772, 3014844_3014849, 3014920_3014925, 3014970_3014976, 3014995_3015002, 3015014_3015021, 3015026_3015031, 3015113_3015118, 3015119_3015126CUCCAG, UCCCAG, CCACUG, CACUAAG, ACCUCCCG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG
354_6408185gi|224514636|ref|NT_011520.12| Homo sapiens chromosome 22 genomic contig, GRCh37.p5 Primary Assembly_r39.1861426760515_26760520, 26760636_26760645, 26760679_26760684, 26760721_26760732, 26760767_26760772, 26760773_26760780UCCCAG, CAUCAAUAUG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG
163_2152544gi|224514941|ref|NT_010393.16| Homo sapiens chromosome 16 genomic contig, GRCh37.p5 Primary Assembly38.997178717138_8717143, 8717144_8717150, 8717235_8717244, 8717266_8717273, 8717278_8717283, 8717372_8717379, 8717386_8717393UCCCAG, CUACUCG, CAUCAAUAUG, ACCACCAG, CCUAAG, CACUCCAG, CAACAUAG
313_2713186gi|224514629|ref|NT_011362.10| Homo sapiens chromosome 20 genomic contig, GRCh37.p5 Primary Assembly38.8561612046965_12046970, 12046971_12046977, 12047063_12047072, 12047104_12047109, 12047153_12047164, 12047205_12047212UCCCAG, CUACUCG, CAUCAAUAUG, CCUAAG, UCAAAACUCCCG, CACUCCAG
478_8711130gi|224514806|ref|NT_008046.16| Homo sapiens chromosome 8 genomic contig, GRCh37.p5 Primary Assembly_r38.8461542922455_42922460, 42922553_42922562, 42922584_42922591, 42922638_42922649, 42922683_42922688, 42922689_42922696UCCCAG, CAUCAAUAUG, ACCACCAG, UCAAAACUCCCG, CCACUG, CACUCCAG
447_7138128gi|224514692|ref|NT_007933.15| Homo sapiens chromosome 7 genomic contig, GRCh37.p5 Primary Assembly38.3261335685911_35685916, 35685995_35686002, 35686007_35686012, 35686049_35686060, 35686101_35686108, 35686115_35686122UCCCAG, ACCACCAG, CCUAAG, UCAAAACUCCCG, CACUCCAG, CAACAUAG
167_8435263gi|51473102|ref|NT_010498.15| Homo sapiens chromosome 16 genomic contig, GRCh37.p5 Primary Assembly37.8061139307292_39307297, 39307339_39307346, 39307351_39307356, 39307393_39307404, 39307439_39307444, 39307445_39307452UCCCAG, ACCACCAG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG
531_10782997gi|224514751|ref|NT_008470.19| Homo sapiens chromosome 9 genomic contig, GRCh37.p5 Primary Assembly37.7871653129818_53129823, 53129824_53129830, 53129895_53129900, 53129903_53129908, 53130115_53130120, 53130157_53130168, 53130203_53130208, 53130209_53130216UCCCAG, CUACUCG, CCACUG, CUCCAG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG
158_2272405gi|224514936|ref|NT_010274.17| Homo sapiens chromosome 15 genomic contig, GRCh37.p5 Primary Assembly_r37.045810945379_10945385, 10945391_10945400, 10945421_10945428, 10945433_10945438, 10945509_10945516CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CAACAUAG
395_877034gi|224514665|ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig, GRCh37.p5 Primary Assembly36.757144367756_4367761, 4367842_4367848, 4367887_4367894, 4367899_4367904, 4367987_4367992, 4367993_4368000, 4368007_4368014UCCCAG, CACUAAG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
10_1505547gi|224514615|ref|NT_004610.19| Homo sapiens chromosome 1 genomic contig, GRCh37.p5 Primary Assembly_r36.657136361194_6361201, 6361206_6361211, 6361263_6361268, 6361269_6361275, 6361308_6361313, 6361314_6361321, 6361322_6361327CAACAUAG, ACCCCG, UCCCAG, CUACUCG, CCACUG, CACUCCAG, CCUAAG
11_13718582gi|224514623|ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, GRCh37.p5 Primary Assembly36.3561267020798_67020804, 67020832_67020841, 67020871_67020876, 67020959_67020964, 67020967_67020972, 67020979_67020986CACUAAG, CAUCAAUAUG, CCUAAG, CCACUG, CUCCAG, CAACAUAG
477_6473595gi|224514806|ref|NT_008046.16| Homo sapiens chromosome 8 genomic contig, GRCh37.p5 Primary Assembly36.235834148478_34148483, 34148576_34148585, 34148589_34148596, 34148607_34148614, 34148619_34148624UCCCAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG
432_7962829gi|224514668|ref|NT_007592.15| Homo sapiens chromosome 6 genomic contig, GRCh37.p5 Primary Assembly_r35.875738358076_38358081, 38358162_38358168, 38358174_38358183, 38358205_38358212, 38358217_38358222UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG
491_4174516gi|224514694|ref|NT_008413.18| Homo sapiens chromosome 9 genomic contig, GRCh37.p5 Primary Assembly35.875721689321_21689326, 21689407_21689413, 21689419_21689428, 21689449_21689456, 21689461_21689466UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG
10_1375800gi|224514615|ref|NT_004610.19| Homo sapiens chromosome 1 genomic contig, GRCh37.p5 Primary Assembly_r35.757155814730_5814735, 5814799_5814805, 5814843_5814850, 5814855_5814860, 5814943_5814948, 5814949_5814956, 5814963_5814970UCCCAG, CACUAAG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
505_57449gi|89029377|ref|NT_078053.4| Homo sapiens chromosome 9 genomic contig, GRCh37.p5 Primary Assembly35.14616311806_311811, 311891_311897, 311903_311912, 311934_311941, 311946_311951, 312045_312052UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CAACAUAG
507_31339gi|224514924|ref|NT_113813.2| Homo sapiens chromosome 9 genomic contig, GRCh37.p5 Primary Assembly35.14616182673_182678, 182758_182764, 182770_182779, 182801_182808, 182813_182818, 182912_182919UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CAACAUAG
520_22439gi|89029460|ref|NT_078066.4| Homo sapiens chromosome 9 genomic contig, GRCh37.p5 Primary Assembly_r35.14616128793_128798, 128878_128884, 128890_128899, 128921_128928, 128933_128938, 129032_129039UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CAACAUAG
183_5367893gi|224514953|ref|NT_010783.15| Homo sapiens chromosome 17 genomic contig, GRCh37.p5 Primary Assembly34.8261424047853_24047858, 24047939_24047945, 24047951_24047960, 24047994_24047999, 24048076_24048081, 24048096_24048103UCCCAG, CACUAAG, CAUCAAUAUG, CCUAAG, CCACUG, CAACAUAG
440_8830206gi|224514859|ref|NT_007819.17| Homo sapiens chromosome 7 genomic contig, GRCh37.p5 Primary Assembly_r34.5861344458984_44458990, 44459076_44459085, 44459119_44459124, 44459206_44459211, 44459212_44459219, 44459226_44459233CUACUCG, CAUCAAUAUG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
183_6545077gi|224514953|ref|NT_010783.15| Homo sapiens chromosome 17 genomic contig, GRCh37.p5 Primary Assembly34.5261329634326_29634331, 29634408_29634414, 29634420_29634429, 29634451_29634458, 29634552_29634557, 29634558_29634565UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCACUG, CACUCCAG
281_5655774gi|224515010|ref|NT_022184.15| Homo sapiens chromosome 2 genomic contig, GRCh37.p5 Primary Assembly34.256827279659_27279666, 27279671_27279676, 27279741_27279746, 27279747_27279753, 27279818_27279823, 27279824_27279831CAACAUAG, ACCCCG, UCCCAG, CUACUCG, CCACUG, CACUCCAG
432_7064712gi|224514668|ref|NT_007592.15| Homo sapiens chromosome 6 genomic contig, GRCh37.p5 Primary Assembly_r34.2461233748684_33748689, 33748690_33748696, 33748757_33748763, 33748800_33748807, 33748812_33748817, 33748936_33748941UCCCAG, CUACUCG, CACUAAG, ACCACCAG, CCUAAG, ACCCCG
500_107424gi|224514798|ref|NT_078043.5| Homo sapiens chromosome 9 genomic contig, GRCh37.p5 Primary Assembly_r34.14617581816_581821, 581901_581907, 581913_581922, 581944_581951, 581956_581961, 582055_582062UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CAACAUAG
509_20049gi|224514741|ref|NT_086755.3| Homo sapiens chromosome 9 genomic contig, GRCh37.p5 Primary Assembly34.14617113865_113870, 113950_113956, 113962_113971, 113993_114000, 114005_114010, 114104_114111UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CAACAUAG
365_6994902gi|224514994|ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig, GRCh37.p5 Primary Assembly34.134435805464_35805473, 35805477_35805484, 35805495_35805502, 35805507_35805512CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG
68_12491256gi|224514917|ref|NT_030059.13| Homo sapiens chromosome 10 genomic contig, GRCh37.p5 Primary Assembly_r33.925859030838_59030847, 59030862_59030869, 59030874_59030879, 59030962_59030967, 59030982_59030989CAUCAAUAUG, ACCACCAG, CCUAAG, CCACUG, CAACAUAG
167_2705214gi|51473102|ref|NT_010498.15| Homo sapiens chromosome 16 genomic contig, GRCh37.p5 Primary Assembly33.645812418735_12418740, 12418793_12418798, 12418835_12418846, 12418881_12418886, 12418887_12418894UCCAUG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG
281_8388693gi|224515010|ref|NT_022184.15| Homo sapiens chromosome 2 genomic contig, GRCh37.p5 Primary Assembly33.5861541540227_41540232, 41540326_41540335, 41540357_41540364, 41540369_41540374, 41540454_41540461, 41540468_41540475UCCCAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CACUCCAG, CAACAUAG
392_336609gi|224514664|ref|NT_022853.15| Homo sapiens chromosome 4 genomic contig, GRCh37.p5 Primary Assembly_r33.56681831424_1831431, 1831436_1831441, 1831496_1831501, 1831502_1831508, 1831573_1831578, 1831581_1831586CAACAUAG, ACCCCG, UCCCAG, CUACUCG, CCACUG, CUCCAG
532_1005293gi|224514751|ref|NT_008470.19| Homo sapiens chromosome 9 genomic contig, GRCh37.p5 Primary Assembly_r33.24684037426_4037433, 4037495_4037500, 4037501_4037507, 4037531_4037536, 4037573_4037578, 4037579_4037586CAACAUAG, UCCCAG, CUACUCG, CCUAAG, CCACUG, CACUCCAG
184_3367842gi|224514953|ref|NT_010783.15| Homo sapiens chromosome 17 genomic contig, GRCh37.p5 Primary Assembly_r33.0661314255671_14255676, 14255769_14255778, 14255800_14255807, 14255812_14255817, 14255869_14255874, 14255875_14255882UCCCAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG
354_6766128gi|224514636|ref|NT_011520.12| Homo sapiens chromosome 22 genomic contig, GRCh37.p5 Primary Assembly_r33.0661328287235_28287240, 28287241_28287248, 28287333_28287338, 28287431_28287440, 28287462_28287469, 28287494_28287499CCACUG, CACUCCAG, UCCCAG, CAUCAAUAUG, ACCACCAG, CCUAAG
532_428540gi|224514751|ref|NT_008470.19| Homo sapiens chromosome 9 genomic contig, GRCh37.p5 Primary Assembly_r32.98681692162_1692167, 1692168_1692174, 1692239_1692244, 1692245_1692252, 1692269_1692274, 1692336_1692341UCCCAG, CUACUCG, CCACUG, CACUCCAG, ACCCCG, UCCAUG
289_529123gi|224514673|ref|NT_022135.16| Homo sapiens chromosome 2 genomic contig, GRCh37.p5 Primary Assembly32.92592436522_2436531, 2436564_2436571, 2436576_2436581, 2436664_2436669, 2436684_2436691CAUCAAUAUG, ACCACCAG, CCUAAG, CCACUG, CAACAUAG
587_4357323gi|224514715|ref|NT_011651.17| Homo sapiens chromosome X genomic contig, GRCh37.p5 Primary Assembly32.9061123757054_23757059, 23757085_23757092, 23757097_23757102, 23757157_23757162, 23757163_23757169, 23757240_23757247CCUAAG, CAACAUAG, ACCCCG, UCCCAG, CUACUCG, CACUCCAG
103_10949788gi|224514900|ref|NT_029419.12| Homo sapiens chromosome 12 genomic contig, GRCh37.p5 Primary Assembly32.8261656368185_56368190, 56368270_56368276, 56368282_56368291, 56368324_56368329, 56368412_56368417, 56368432_56368439UCCCAG, CACUAAG, CAUCAAUAUG, CCUAAG, CCACUG, CAACAUAG
7_1595439gi|224514681|ref|NT_021937.19| Homo sapiens chromosome 1 genomic contig, GRCh37.p5 Primary Assembly32.76586681737_6681743, 6681749_6681758, 6681791_6681796, 6681862_6681867, 6681868_6681875CACUAAG, CAUCAAUAUG, CCUAAG, CCACUG, CACUCCAG
104_2621938gi|224514900|ref|NT_029419.12| Homo sapiens chromosome 12 genomic contig, GRCh37.p5 Primary Assembly_r32.7571812877471_12877476, 12877557_12877563, 12877600_12877607, 12877612_12877617, 12877700_12877705, 12877706_12877713, 12877720_12877727UCCCAG, CACUAAG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
167_4296859gi|51473102|ref|NT_010498.15| Homo sapiens chromosome 16 genomic contig, GRCh37.p5 Primary Assembly32.1461220667648_20667653, 20667654_20667660, 20667734_20667740, 20667777_20667784, 20667789_20667794, 20667883_20667890UCCCAG, CUACUCG, CACUAAG, ACCACCAG, CCUAAG, CACUCCAG
132_1470529gi|224514830|ref|NT_024524.14| Homo sapiens chromosome 13 genomic contig, GRCh37.p5 Primary Assembly_r32.12498238445_8238450, 8238543_8238552, 8238572_8238577, 8238614_8238625UCCCAG, CAUCAAUAUG, CCUAAG, UCAAAACUCCCG
10_695792gi|224514615|ref|NT_004610.19| Homo sapiens chromosome 1 genomic contig, GRCh37.p5 Primary Assembly_r32.066142958072_2958077, 2958174_2958183, 2958206_2958213, 2958218_2958223, 2958306_2958311, 2958312_2958319UCCCAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG
313_1794709gi|224514629|ref|NT_011362.10| Homo sapiens chromosome 20 genomic contig, GRCh37.p5 Primary Assembly32.01587697530_7697535, 7697536_7697542, 7697616_7697622, 7697641_7697648, 7697671_7697676UCCCAG, CUACUCG, CACUAAG, ACCUCCCG, CCUAAG
578_1599607gi|224514793|ref|NT_079573.4| Homo sapiens chromosome X genomic contig, GRCh37.p5 Primary Assembly_r32.00477700404_7700413, 7700488_7700499, 7700534_7700539, 7700542_7700547CAUCAAUAUG, UCAAAACUCCCG, CCACUG, CUCCAG
433_5251579gi|224514687|ref|NT_007299.13| Homo sapiens chromosome 6 genomic contig, GRCh37.p5 Primary Assembly31.9251028307813_28307822, 28307844_28307851, 28307856_28307861, 28307944_28307949, 28307964_28307971CAUCAAUAUG, ACCACCAG, CCUAAG, CCACUG, CAACAUAG
144_1179053gi|224514933|ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig, GRCh37.p5 Primary Assembly_r31.796114745836_4745841, 4745883_4745890, 4745895_4745900, 4745982_4745987, 4745988_4745995, 4746002_4746009UCCAUG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
157_1264172gi|224514936|ref|NT_010274.17| Homo sapiens chromosome 15 genomic contig, GRCh37.p5 Primary Assembly31.77455802793_5802799, 5802805_5802814, 5802836_5802843, 5802848_5802853CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG
364_3246802gi|224514616|ref|NT_022459.15| Homo sapiens chromosome 3 genomic contig, GRCh37.p5 Primary Assembly_r31.7061117903486_17903493, 17903556_17903561, 17903562_17903568, 17903615_17903621, 17903633_17903638, 17903639_17903646CAACAUAG, UCCCAG, CUACUCG, CACUAAG, CCACUG, CACUCCAG
184_8347636gi|224514953|ref|NT_010783.15| Homo sapiens chromosome 17 genomic contig, GRCh37.p5 Primary Assembly_r31.6571837340696_37340701, 37340784_37340789, 37340790_37340797, 37340804_37340811, 37340816_37340821, 37340991_37340996, 37340997_37341003CCUAAG, CCACUG, CACUCCAG, CAACAUAG, ACCCCG, UCCCAG, CUACUCG
242_2321348gi|224514627|ref|NT_011109.16| Homo sapiens chromosome 19 genomic contig, GRCh37.p5 Primary Assembly_r31.657189673583_9673588, 9673589_9673595, 9673666_9673673, 9673849_9673856, 9673994_9673999, 9674007_9674012, 9674025_9674030UCCCAG, CUACUCG, CACUCCAG, CAACAUAG, CCACUG, CCUAAG, ACCCCG
292_12745400gi|224514625|ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig, GRCh37.p5 Primary Assembly_r31.606865223581_65223586, 65223587_65223593, 65223658_65223663, 65223664_65223671, 65223688_65223693, 65223763_65223768UCCCAG, CUACUCG, CCACUG, CACUCCAG, ACCCCG, CUCCAG
163_320884gi|224514941|ref|NT_010393.16| Homo sapiens chromosome 16 genomic contig, GRCh37.p5 Primary Assembly31.506121105861_1105868, 1105873_1105878, 1105940_1105945, 1105946_1105952, 1106023_1106030, 1106096_1106101CAACAUAG, ACCCCG, UCCCAG, CUACUCG, CACUCCAG, UCCAUG
435_7268953gi|224514841|ref|NT_025741.15| Homo sapiens chromosome 6 genomic contig, GRCh37.p5 Primary Assembly31.4861138624195_38624200, 38624280_38624286, 38624323_38624330, 38624335_38624340, 38624423_38624428, 38624429_38624436UCCCAG, CACUAAG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG
361_11984939gi|224515018|ref|NT_022517.18| Homo sapiens chromosome 3 genomic contig, GRCh37.p5 Primary Assembly31.466757674719_57674724, 57674725_57674731, 57674775_57674780, 57674790_57674795, 57674796_57674801, 57674802_57674809UCCCAG, CUACUCG, CUCCAG, AUCUCG, CCACUG, CACUCCAG
449_209891gi|224514812|ref|NT_007914.15| Homo sapiens chromosome 7 genomic contig, GRCh37.p5 Primary Assembly31.39512941364_941370, 941376_941385, 941407_941414, 941507_941512, 941527_941534CACUAAG, CAUCAAUAUG, ACCACCAG, CCACUG, CAACAUAG
31_314194gi|224514980|ref|NT_004487.19| Homo sapiens chromosome 1 genomic contig, GRCh37.p5 Primary Assembly31.305121672599_1672604, 1672684_1672690, 1672739_1672744, 1672783_1672794, 1672829_1672834UCCCAG, CACUAAG, CCUAAG, UCAAAACUCCCG, CCACUG
623_128387gi|224514809|ref|NT_011875.12| Homo sapiens chromosome Y genomic contig, GRCh37.p5 Primary Assembly31.30512595631_595636, 595716_595722, 595759_595764, 595801_595812, 595847_595852UCCCAG, CACUAAG, CCUAAG, UCAAAACUCCCG, CCACUG
56_6243983gi|224514932|ref|NT_008705.16| Homo sapiens chromosome 10 genomic contig, GRCh37.p5 Primary Assembly_r31.2561131003844_31003851, 31003856_31003861, 31003914_31003919, 31003920_31003926, 31003991_31003996, 31003997_31004004CAACAUAG, ACCCCG, UCCCAG, CUACUCG, CCACUG, CACUCCAG
134_2334801gi|37544901|ref|NT_009952.14| Homo sapiens chromosome 13 genomic contig, GRCh37.p5 Primary Assembly_r31.2461011820078_11820083, 11820109_11820116, 11820182_11820187, 11820188_11820194, 11820259_11820264, 11820265_11820272CCUAAG, CAACAUAG, UCCCAG, CUACUCG, CCACUG, CACUCCAG
157_1098862gi|224514936|ref|NT_010274.17| Homo sapiens chromosome 15 genomic contig, GRCh37.p5 Primary Assembly31.246105113339_5113344, 5113345_5113352, 5113410_5113415, 5113416_5113422, 5113487_5113492, 5113493_5113500CCUAAG, CAACAUAG, UCCCAG, CUACUCG, CCACUG, CACUCCAG
416_3358436gi|224514970|ref|NT_034772.6| Homo sapiens chromosome 5 genomic contig, GRCh37.p5 Primary Assembly_r31.175916428719_16428728, 16428733_16428738, 16428762_16428767, 16428850_16428855, 16428856_16428863, 16428870_16428877CAUCAAUAUG, CCACUG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
163_5011903gi|224514941|ref|NT_010393.16| Homo sapiens chromosome 16 genomic contig, GRCh37.p5 Primary Assembly31.1061121473707_21473714, 21473719_21473724, 21473777_21473782, 21473855_21473860, 21473861_21473868, 21473968_21473973CAACAUAG, ACCCCG, UCCCAG, CCACUG, CACUCCAG, AUCUCG
239_2097365gi|224514626|ref|NT_011295.11| Homo sapiens chromosome 19 genomic contig, GRCh37.p5 Primary Assembly31.046118566087_8566092, 8566093_8566099, 8566164_8566169, 8566170_8566177, 8566251_8566258, 8566341_8566346UCCCAG, CUACUCG, CCACUG, CACUCCAG, CACACCAG, ACCCCG
440_8138631gi|224514859|ref|NT_007819.17| Homo sapiens chromosome 7 genomic contig, GRCh37.p5 Primary Assembly_r30.976941055956_41055961, 41055962_41055968, 41056033_41056038, 41056039_41056046, 41056098_41056103, 41056104_41056109UCCCAG, CUACUCG, CCACUG, CACUCCAG, UCCAUG, CCUAAG
241_5774105gi|224514627|ref|NT_011109.16| Homo sapiens chromosome 19 genomic contig, GRCh37.p5 Primary Assembly30.8461024211432_24211437, 24211457_24211464, 24211528_24211533, 24211534_24211540, 24211605_24211610, 24211611_24211618UCCAUG, CAACAUAG, UCCCAG, CUACUCG, CCACUG, CACUCCAG
144_10164427gi|224514933|ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig, GRCh37.p5 Primary Assembly_r30.8361147641740_47641745, 47641753_47641758, 47641819_47641826, 47641831_47641836, 47641887_47641892, 47641964_47641969, 47641970_47641977UCCAUG, UCCCAG, CAACAUAG, ACCCCG, UCCCAG, CCACUG, CACUCCAG
365_3680633gi|224514994|ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig, GRCh37.p5 Primary Assembly30.834619846724_19846729, 19846822_19846831, 19846835_19846842, 19846853_19846860UCCCAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG
447_7164916gi|224514692|ref|NT_007933.15| Homo sapiens chromosome 7 genomic contig, GRCh37.p5 Primary Assembly30.5561035802980_35802985, 35803015_35803022, 35803093_35803098, 35803099_35803105, 35803170_35803175, 35803178_35803183CCUAAG, CAACAUAG, UCCCAG, CUACUCG, CCACUG, CUCCAG
106_2777226gi|224514709|ref|NT_009775.17| Homo sapiens chromosome 12 genomic contig, GRCh37.p5 Primary Assembly_r30.5261712226337_12226342, 12226423_12226429, 12226435_12226444, 12226465_12226472, 12226563_12226568, 12226569_12226576UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCACUG, CACUCCAG
291_16204302gi|224514625|ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig, GRCh37.p5 Primary Assembly30.514583724187_83724198, 83724233_83724238, 83724239_83724246, 83724253_83724260UCAAAACUCCCG, CCACUG, CACUCCAG, CAACAUAG
240_3041904gi|224514626|ref|NT_011295.11| Homo sapiens chromosome 19 genomic contig, GRCh37.p5 Primary Assembly_r30.4461413004741_13004747, 13004784_13004791, 13004796_13004801, 13004879_13004884, 13004899_13004906, 13004929_13004934CACUAAG, ACCACCAG, CCUAAG, CCACUG, CAACAUAG, UCCCAG
585_336634gi|224514697|ref|NT_011669.17| Homo sapiens chromosome X genomic contig, GRCh37.p5 Primary Assembly30.446141748585_1748590, 1748671_1748677, 1748714_1748721, 1748726_1748731, 1748814_1748819, 1748834_1748841UCCCAG, CACUAAG, ACCACCAG, CCUAAG, CCACUG, CAACAUAG
448_8139381gi|224514692|ref|NT_007933.15| Homo sapiens chromosome 7 genomic contig, GRCh37.p5 Primary Assembly_r30.285540924697_40924702, 40924703_40924709, 40924738_40924743, 40924773_40924780, 40924781_40924788UCCCAG, CUACUCG, CCUAAG, CACCACAG, CACUCCAG

Oligonucleotide-RNA matrix
 RNA143_5933299144_12035002144_12036845491_1863337361_3308216362_3881965435_5146560448_9289486277_1422701314_4009805131_4589305314_2690741533_15572241_2788575396_12776619354_6441298240_1722910239_1464873177_539227281_9794982181_101942831_6506552413_2764719368_517098239_1465940183_5408882309_683915354_6408185163_2152544313_2713186478_8711130447_7138128167_8435263531_10782997158_2272405395_87703410_150554711_13718582477_6473595432_7962829491_417451610_1375800505_57449507_31339520_22439183_5367893440_8830206183_6545077281_5655774432_7064712500_107424509_20049365_699490268_12491256167_2705214281_8388693392_336609532_1005293184_3367842354_6766128532_428540289_529123587_4357323103_109497887_1595439104_2621938167_4296859132_147052910_695792313_1794709578_1599607433_5251579144_1179053157_1264172364_3246802184_8347636242_2321348292_12745400163_320884435_7268953361_11984939449_20989131_314194623_12838756_6243983134_2334801157_1098862416_3358436163_5011903239_2097365440_8138631241_5774105144_10164427365_3680633447_7164916106_2777226291_16204302240_3041904585_336634448_8139381
 rank11345678991112131415161718192021222324252627282930313233343536373839404042434343464748495051515354555657585959616263646566676869707172737475767678798081828383858686888990919293939596979898100
 score92.4392.4376.1667.7066.7048.8748.1246.3946.1046.1045.1944.7544.1043.5342.9642.8142.1541.4441.1341.0640.9240.7540.1539.6939.4439.3539.3339.1838.9938.8538.8438.3237.8037.7837.0436.7536.6536.3536.2335.8735.8735.7535.1435.1435.1434.8234.5834.5234.2534.2434.1434.1434.1333.9233.6433.5833.5633.2433.0633.0632.9832.9232.9032.8232.7632.7532.1432.1232.0632.0132.0031.9231.7931.7731.7031.6531.6531.6031.5031.4831.4631.3931.3031.3031.2531.2431.2431.1731.1031.0430.9730.8430.8330.8330.5530.5230.5130.4430.4430.28
 length2672672571951954391092341472353781491481711762552543242572403192411561613281673602662562482422121613991382591341891471471462412472472472512502401732582472474915216024916316121226518017019425513925724318124814714415917461161308448188241242911712362221611951621592672601541872381372042407419425792
oligonucleotideq#                                                                                                    
UCCCAG15,16,951111110111101001111110001011111111011011111111011111000111111011011111000011111110111110111121110111
CUACUCG61111110100000000100101000000110001001000000000101100000011001010001001000011111010001110011100100001
CACUAAG1011101101010111110111111011110000000110101111111010111000000000001111001000110000101110000000000010110
CAUCAAUAUG311111111111111011111000111101111000100111101111110011110100110101100110110100000001000001000001010000
ACCUCCCG131111101111011011000111100010000000000010000000000000100000000000000001000000000000000000000001000000
ACCACCAG411111100110111101010000111110101110110011111110010111110100110100011010011100000101000000000001010110
CCUAAG9,201111111111111111011110101111110111111111111111100111111101110111111111011101100100110111001000100111
UCAAAACUCCCG211111111001000100000001000001011111000000000000000000001000000000000100100000000000110000000000001000
CCACUG5,371110010101110110101111110021001012011100010001111000011011111101110010111011110111111112111110111110
CACUCCAG40,491110020000100001111111011111111111011000010000111000001101111010111010001011111110001111111110011001
CAACAUAG221110010000100111111010111100100100111100011111101011010111000111010000011011101001001111100110101110
ACCCCG391100000000000000000000000000000000001000000000001100000010001010000000000001111000001000110010000000
UCCAUG700000000000000000000010000000000000000000000000000000001000001000000000001000001000000000001110000000
CUCCAG150000000000000000000000000010000001000100000000000000000010000000000000100000010010000000000000100000
AUCUCG440000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000
CACACCAG41,460000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
CACCACAG410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001


MS/MS ion search

Select display table  

Matched nucleotide list(overall)

Not hit nucleotide list(overall)