Ariadne: Results view

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Search parameter
Nucleotide mapping

Score histgram

Identification summary

Oligonucleotide-RNA matrix

MS/MS ion search

Matched nucleotide list(overall)


Search parameter

species: H_sapiens
db_name: genome
db_date: 111212

Enzyme_pattern_file: RNaseT1.txt
max_mods: 0
max_missed_cleavages: 0
5prime: OH
3prime: P
Mass_tolerance: 20
MS2_tolerance: 750
base_number: 3
reject_length_for_mapping: 5
mgf_file: human_smallRNA_fraction.mgf
mass_table: default

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Nucleotide mapping

Score histgram

Theoretical threshold: 37.68(5%) 41.74(1%)
Empirical threshold: 73.56(5%) 81.59(1%)
Identification summary
RNA desc score matched sum matched_positions matched_sequences
143_5933299 gi|224514933|re 92.43 12 12 31053325_31053330, 31053331_31053337, 31053411_31053417, 31053423_31053432, 31053436_31053443, 31053454_31053461, 31053466_31053471, 31053508_31053519, 31053554_31053559, 31053560_31053567, 31053574_31053581, 31053586_31053591 UCCCAG, CUACUCG, CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG, CAACAUAG, ACCCCG
144_12035002 gi|224514933|re_r 92.43 12 12 31329540_31329535, 31329534_31329528, 31329454_31329448, 31329442_31329433, 31329429_31329422, 31329411_31329404, 31329399_31329394, 31329357_31329346, 31329311_31329306, 31329305_31329298, 31329291_31329284, 31329279_31329274 UCCCAG, CUACUCG, CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG, CAACAUAG, ACCCCG
144_12036845 gi|224514933|re_r 76.16 10 11 31320605_31320600, 31320599_31320593, 31320507_31320498, 31320494_31320487, 31320476_31320469, 31320464_31320459, 31320422_31320411, 31320376_31320371, 31320370_31320363, 31320356_31320349 UCCCAG, CUACUCG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG, CAACAUAG
491_1863337 gi|224514694|re 67.70 8 8 9432087_9432092, 9432093_9432099, 9432173_9432179, 9432185_9432194, 9432198_9432205, 9432216_9432223, 9432228_9432233, 9432270_9432281 UCCCAG, CUACUCG, CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, UCAAAACUCCCG
361_3308216 gi|224515018|re 66.70 8 9 15720049_15720054, 15720055_15720061, 15720135_15720141, 15720147_15720156, 15720160_15720167, 15720178_15720185, 15720190_15720195, 15720232_15720243 UCCCAG, CUACUCG, CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, UCAAAACUCCCG
362_3881965 gi|224515018|re_r 48.87 8 20 48076744_48076739, 48076738_48076732, 48076661_48076654, 48076464_48076455, 48076421_48076416, 48076379_48076368, 48076333_48076328, 48076327_48076320, 48076313_48076306 UCCCAG, CUACUCG, CACUCCAG, CAUCAAUAUG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG, CAACAUAG
435_5146560 gi|224514841|re 48.12 5 6 27235973_27235979, 27235985_27235994, 27235998_27236005, 27236028_27236033, 27236070_27236081 CACUAAG, CAUCAAUAUG, ACCUCCCG, CCUAAG, UCAAAACUCCCG
448_9289486 gi|224514692|re_r 46.39 7 11 30633429_30633424, 30633423_30633417, 30633331_30633322, 30633318_30633311, 30633301_30633294, 30633289_30633284, 30633201_30633196 UCCCAG, CUACUCG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, CCACUG
277_1422701 gi|224514621|re 46.10 6 7 6606138_6606143, 6606224_6606230, 6606236_6606245, 6606249_6606256, 6606267_6606274, 6606279_6606284 UCCCAG, CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG
314_4009805 gi|224514629|re_r 46.10 6 11 13705840_13705835, 13705742_13705733, 13705729_13705722, 13705699_13705694, 13705657_13705646, 13705611_13705606 UCCCAG, CAUCAAUAUG, ACCUCCCG, CCUAAG, UCAAAACUCCCG, CCACUG
131_4589305 gi|224514830|re 45.19 8 18 22676039_22676044, 22676125_22676131, 22676137_22676146, 22676168_22676175, 22676180_22676185, 22676268_22676273, 22676274_22676281, 22676409_22676416 UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
314_2690741 gi|224514629|re_r 44.75 6 8 19370496_19370490, 19370484_19370475, 19370471_19370464, 19370453_19370446, 19370441_19370436, 19370353_19370348 CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, CCACUG
533_15572 gi|51467290|ref 44.10 6 9 52620_52625, 52707_52713, 52719_52728, 52732_52739, 52750_52757, 52762_52767 UCCCAG, CACUAAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG
241_2788575 gi|224514627|re 43.53 6 10 12128121_12128127, 12128164_12128171, 12128176_12128181, 12128218_12128229, 12128264_12128269, 12128284_12128291 CACUAAG, ACCACCAG, CCUAAG, UCAAAACUCCCG, CCACUG, CAACAUAG
396_12776619 gi|224514665|re_r 42.96 6 10 47556575_47556569, 47556563_47556554, 47556550_47556543, 47556528_47556523, 47556427_47556422, 47556407_47556400 CACUAAG, CAUCAAUAUG, ACCUCCCG, CCUAAG, CCACUG, CAACAUAG
354_6441298 gi|224514636|re_r 42.81 7 16 2865755_2865750, 2865659_2865650, 2865646_2865639, 2865628_2865621, 2865616_2865611, 2865522_2865515, 2865508_2865501 UCCCAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, CACUCCAG, CAACAUAG
240_1722910 gi|224514626|re_r 42.15 7 13 8284369_8284364, 8284363_8284357, 8284284_8284278, 8284272_8284263, 8284143_8284138, 8284137_8284130, 8284123_8284116 UCCCAG, CUACUCG, CACUAAG, CAUCAAUAUG, CCACUG, CACUCCAG, CAACAUAG
239_1464873 gi|224514626|re 41.44 7 16 5957657_5957664, 5957736_5957741, 5957821_5957827, 5957833_5957842, 5957864_5957871, 5957876_5957881, 5957973_5957980 CAACAUAG, UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CACUCCAG
177_539227 gi|224514945|re 41.13 7 14 2187633_2187638, 2187719_2187725, 2187731_2187740, 2187774_2187779, 2187862_2187867, 2187868_2187875, 2187882_2187889 UCCCAG, CACUAAG, CAUCAAUAUG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
281_9794982 gi|224515010|re 41.06 7 11 48565797_48565802, 48565803_48565809, 48565884_48565890, 48565909_48565916, 48565935_48565940, 48566023_48566028, 48566029_48566036 UCCCAG, CUACUCG, CACUAAG, ACCUCCCG, CCUAAG, CCACUG, CACUCCAG
181_1019428 gi|224514948|re 40.92 8 19 4582408_4582413, 4582470_4582475, 4582556_4582562, 4582581_4582588, 4582611_4582616, 4582699_4582704, 4582705_4582712, 4582719_4582726 UCCAUG, UCCCAG, CACUAAG, ACCUCCCG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
31_6506552 gi|224514980|re 40.75 6 13 31358072_31358078, 31358156_31358162, 31358181_31358188, 31358253_31358264, 31358299_31358304, 31358305_31358312 CUACUCG, CACUAAG, ACCUCCCG, UCAAAACUCCCG, CCACUG, CACUCCAG
413_2764719 gi|224514619|re 40.15 6 12 14429812_14429821, 14429825_14429832, 14429840_14429847, 14429852_14429857, 14429940_14429945, 14429960_14429967 CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG, CCACUG, CAACAUAG
368_517098 gi|224514999|re_r 39.69 6 10 1600637_1600631, 1600625_1600616, 1600594_1600587, 1600504_1600499, 1600498_1600491, 1600484_1600477 CACUAAG, CAUCAAUAUG, ACCACCAG, CCACUG, CACUCCAG, CAACAUAG
239_1465940 gi|224514626|re 39.44 7 18 5961914_5961921, 5961998_5962003, 5962083_5962089, 5962095_5962104, 5962125_5962132, 5962137_5962142, 5962234_5962241 CAACAUAG, UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CACUCCAG
183_5408882 gi|224514953|re 39.35 6 12 24251517_24251523, 24251529_24251538, 24251560_24251567, 24251572_24251577, 24251662_24251669, 24251676_24251683 CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CACUCCAG, CAACAUAG
309_683915 gi|27501067|ref 39.33 8 19 3014767_3014772, 3014844_3014849, 3014920_3014925, 3014970_3014976, 3014995_3015002, 3015014_3015021, 3015026_3015031, 3015113_3015118, 3015119_3015126 CUCCAG, UCCCAG, CCACUG, CACUAAG, ACCUCCCG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG
354_6408185 gi|224514636|re_r 39.18 6 14 2994832_2994827, 2994711_2994702, 2994668_2994663, 2994626_2994615, 2994580_2994575, 2994574_2994567 UCCCAG, CAUCAAUAUG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG
163_2152544 gi|224514941|re 38.99 7 17 8717138_8717143, 8717144_8717150, 8717235_8717244, 8717266_8717273, 8717278_8717283, 8717372_8717379, 8717386_8717393 UCCCAG, CUACUCG, CAUCAAUAUG, ACCACCAG, CCUAAG, CACUCCAG, CAACAUAG
313_2713186 gi|224514629|re 38.85 6 16 12046965_12046970, 12046971_12046977, 12047063_12047072, 12047104_12047109, 12047153_12047164, 12047205_12047212 UCCCAG, CUACUCG, CAUCAAUAUG, CCUAAG, UCAAAACUCCCG, CACUCCAG
478_8711130 gi|224514806|re_r 38.84 6 15 15683683_15683678, 15683585_15683576, 15683554_15683547, 15683500_15683489, 15683455_15683450, 15683449_15683442 UCCCAG, CAUCAAUAUG, ACCACCAG, UCAAAACUCCCG, CCACUG, CACUCCAG
447_7138128 gi|224514692|re 38.32 6 13 35685911_35685916, 35685995_35686002, 35686007_35686012, 35686049_35686060, 35686101_35686108, 35686115_35686122 UCCCAG, ACCACCAG, CCUAAG, UCAAAACUCCCG, CACUCCAG, CAACAUAG
167_8435263 gi|51473102|ref 37.80 6 11 39307292_39307297, 39307339_39307346, 39307351_39307356, 39307393_39307404, 39307439_39307444, 39307445_39307452 UCCCAG, ACCACCAG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG
531_10782997 gi|224514751|re 37.78 7 16 53129818_53129823, 53129824_53129830, 53129895_53129900, 53129903_53129908, 53130115_53130120, 53130157_53130168, 53130203_53130208, 53130209_53130216 UCCCAG, CUACUCG, CCACUG, CUCCAG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG
158_2272405 gi|224514936|re_r 37.04 5 8 6541541_6541535, 6541529_6541520, 6541499_6541492, 6541487_6541482, 6541411_6541404 CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CAACAUAG
395_877034 gi|224514665|re 36.75 7 14 4367756_4367761, 4367842_4367848, 4367887_4367894, 4367899_4367904, 4367987_4367992, 4367993_4368000, 4368007_4368014 UCCCAG, CACUAAG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
10_1505547 gi|224514615|re_r 36.65 7 13 10196977_10196970, 10196965_10196960, 10196908_10196903, 10196902_10196896, 10196863_10196858, 10196857_10196850, 10196849_10196844 CAACAUAG, ACCCCG, UCCCAG, CUACUCG, CCACUG, CACUCCAG, CCUAAG
11_13718582 gi|224514623|re 36.35 6 12 67020798_67020804, 67020832_67020841, 67020871_67020876, 67020959_67020964, 67020967_67020972, 67020979_67020986 CACUAAG, CAUCAAUAUG, CCUAAG, CCACUG, CUCCAG, CAACAUAG
477_6473595 gi|224514806|re 36.23 5 8 34148478_34148483, 34148576_34148585, 34148589_34148596, 34148607_34148614, 34148619_34148624 UCCCAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG
432_7962829 gi|224514668|re_r 35.87 5 7 20362091_20362086, 20362005_20361999, 20361993_20361984, 20361962_20361955, 20361950_20361945 UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG
491_4174516 gi|224514694|re 35.87 5 7 21689321_21689326, 21689407_21689413, 21689419_21689428, 21689449_21689456, 21689461_21689466 UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG
10_1375800 gi|224514615|re_r 35.75 7 15 10743441_10743436, 10743372_10743366, 10743328_10743321, 10743316_10743311, 10743228_10743223, 10743222_10743215, 10743208_10743201 UCCCAG, CACUAAG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
505_57449 gi|89029377|ref 35.14 6 16 311806_311811, 311891_311897, 311903_311912, 311934_311941, 311946_311951, 312045_312052 UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CAACAUAG
507_31339 gi|224514924|re 35.14 6 16 182673_182678, 182758_182764, 182770_182779, 182801_182808, 182813_182818, 182912_182919 UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CAACAUAG
520_22439 gi|89029460|ref_r 35.14 6 16 342910_342905, 342825_342819, 342813_342804, 342782_342775, 342770_342765, 342671_342664 UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CAACAUAG
183_5367893 gi|224514953|re 34.82 6 14 24047853_24047858, 24047939_24047945, 24047951_24047960, 24047994_24047999, 24048076_24048081, 24048096_24048103 UCCCAG, CACUAAG, CAUCAAUAUG, CCUAAG, CCACUG, CAACAUAG
440_8830206 gi|224514859|re_r 34.58 6 13 5901648_5901642, 5901556_5901547, 5901513_5901508, 5901426_5901421, 5901420_5901413, 5901406_5901399 CUACUCG, CAUCAAUAUG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
183_6545077 gi|224514953|re 34.52 6 13 29634326_29634331, 29634408_29634414, 29634420_29634429, 29634451_29634458, 29634552_29634557, 29634558_29634565 UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCACUG, CACUCCAG
281_5655774 gi|224515010|re 34.25 6 8 27279659_27279666, 27279671_27279676, 27279741_27279746, 27279747_27279753, 27279818_27279823, 27279824_27279831 CAACAUAG, ACCCCG, UCCCAG, CUACUCG, CCACUG, CACUCCAG
432_7064712 gi|224514668|re_r 34.24 6 12 24971483_24971478, 24971477_24971471, 24971410_24971404, 24971367_24971360, 24971355_24971350, 24971231_24971226 UCCCAG, CUACUCG, CACUAAG, ACCACCAG, CCUAAG, ACCCCG
500_107424 gi|224514798|re_r 34.14 6 17 616347_616342, 616262_616256, 616250_616241, 616219_616212, 616207_616202, 616108_616101 UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CAACAUAG
509_20049 gi|224514741|re 34.14 6 17 113865_113870, 113950_113956, 113962_113971, 113993_114000, 114005_114010, 114104_114111 UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CAACAUAG
365_6994902 gi|224514994|re 34.13 4 4 35805464_35805473, 35805477_35805484, 35805495_35805502, 35805507_35805512 CAUCAAUAUG, ACCUCCCG, ACCACCAG, CCUAAG
68_12491256 gi|224514917|re_r 33.92 5 8 20389696_20389687, 20389672_20389665, 20389660_20389655, 20389572_20389567, 20389552_20389545 CAUCAAUAUG, ACCACCAG, CCUAAG, CCACUG, CAACAUAG
167_2705214 gi|51473102|ref 33.64 5 8 12418735_12418740, 12418793_12418798, 12418835_12418846, 12418881_12418886, 12418887_12418894 UCCAUG, CCUAAG, UCAAAACUCCCG, CCACUG, CACUCCAG
281_8388693 gi|224515010|re 33.58 6 15 41540227_41540232, 41540326_41540335, 41540357_41540364, 41540369_41540374, 41540454_41540461, 41540468_41540475 UCCCAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CACUCCAG, CAACAUAG
392_336609 gi|224514664|re_r 33.56 6 8 5247793_5247786, 5247781_5247776, 5247721_5247716, 5247715_5247709, 5247644_5247639, 5247636_5247631 CAACAUAG, ACCCCG, UCCCAG, CUACUCG, CCACUG, CUCCAG
532_1005293 gi|224514751|re_r 33.24 6 8 58200167_58200160, 58200098_58200093, 58200092_58200086, 58200062_58200057, 58200020_58200015, 58200014_58200007 CAACAUAG, UCCCAG, CUACUCG, CCUAAG, CCACUG, CACUCCAG
184_3367842 gi|224514953|re_r 33.06 6 13 30727531_30727526, 30727433_30727424, 30727402_30727395, 30727390_30727385, 30727333_30727328, 30727327_30727320 UCCCAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG
354_6766128 gi|224514636|re_r 33.06 6 13 1468112_1468107, 1468106_1468099, 1468014_1468009, 1467916_1467907, 1467885_1467878, 1467853_1467848 CCACUG, CACUCCAG, UCCCAG, CAUCAAUAUG, ACCACCAG, CCUAAG
532_428540 gi|224514751|re_r 32.98 6 8 60545431_60545426, 60545425_60545419, 60545354_60545349, 60545348_60545341, 60545324_60545319, 60545257_60545252 UCCCAG, CUACUCG, CCACUG, CACUCCAG, ACCCCG, UCCAUG
289_529123 gi|224514673|re 32.92 5 9 2436522_2436531, 2436564_2436571, 2436576_2436581, 2436664_2436669, 2436684_2436691 CAUCAAUAUG, ACCACCAG, CCUAAG, CCACUG, CAACAUAG
587_4357323 gi|224514715|re 32.90 6 11 23757054_23757059, 23757085_23757092, 23757097_23757102, 23757157_23757162, 23757163_23757169, 23757240_23757247 CCUAAG, CAACAUAG, ACCCCG, UCCCAG, CUACUCG, CACUCCAG
103_10949788 gi|224514900|re 32.82 6 16 56368185_56368190, 56368270_56368276, 56368282_56368291, 56368324_56368329, 56368412_56368417, 56368432_56368439 UCCCAG, CACUAAG, CAUCAAUAUG, CCUAAG, CCACUG, CAACAUAG
7_1595439 gi|224514681|re 32.76 5 8 6681737_6681743, 6681749_6681758, 6681791_6681796, 6681862_6681867, 6681868_6681875 CACUAAG, CAUCAAUAUG, CCUAAG, CCACUG, CACUCCAG
104_2621938 gi|224514900|re_r 32.75 7 18 58639306_58639301, 58639220_58639214, 58639177_58639170, 58639165_58639160, 58639077_58639072, 58639071_58639064, 58639057_58639050 UCCCAG, CACUAAG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
167_4296859 gi|51473102|ref 32.14 6 12 20667648_20667653, 20667654_20667660, 20667734_20667740, 20667777_20667784, 20667789_20667794, 20667883_20667890 UCCCAG, CUACUCG, CACUAAG, ACCACCAG, CCUAAG, CACUCCAG
132_1470529 gi|224514830|re_r 32.12 4 9 59501880_59501875, 59501782_59501773, 59501753_59501748, 59501711_59501700 UCCCAG, CAUCAAUAUG, CCUAAG, UCAAAACUCCCG
10_695792 gi|224514615|re_r 32.06 6 14 13600099_13600094, 13599997_13599988, 13599965_13599958, 13599953_13599948, 13599865_13599860, 13599859_13599852 UCCCAG, CAUCAAUAUG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG
313_1794709 gi|224514629|re 32.01 5 8 7697530_7697535, 7697536_7697542, 7697616_7697622, 7697641_7697648, 7697671_7697676 UCCCAG, CUACUCG, CACUAAG, ACCUCCCG, CCUAAG
578_1599607 gi|224514793|re_r 32.00 4 7 4394338_4394329, 4394254_4394243, 4394208_4394203, 4394200_4394195 CAUCAAUAUG, UCAAAACUCCCG, CCACUG, CUCCAG
433_5251579 gi|224514687|re 31.92 5 10 28307813_28307822, 28307844_28307851, 28307856_28307861, 28307944_28307949, 28307964_28307971 CAUCAAUAUG, ACCACCAG, CCUAAG, CCACUG, CAACAUAG
144_1179053 gi|224514933|re_r 31.79 6 11 83543705_83543700, 83543658_83543651, 83543646_83543641, 83543559_83543554, 83543553_83543546, 83543539_83543532 UCCAUG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
157_1264172 gi|224514936|re 31.77 4 5 5802793_5802799, 5802805_5802814, 5802836_5802843, 5802848_5802853 CACUAAG, CAUCAAUAUG, ACCACCAG, CCUAAG
364_3246802 gi|224514616|re_r 31.70 6 11 6331099_6331092, 6331029_6331024, 6331023_6331017, 6330970_6330964, 6330952_6330947, 6330946_6330939 CAACAUAG, UCCCAG, CUACUCG, CACUAAG, CCACUG, CACUCCAG
184_8347636 gi|224514953|re_r 31.65 7 18 7642506_7642501, 7642418_7642413, 7642412_7642405, 7642398_7642391, 7642386_7642381, 7642211_7642206, 7642205_7642199 CCUAAG, CCACUG, CACUCCAG, CAACAUAG, ACCCCG, UCCCAG, CUACUCG
242_2321348 gi|224514627|re_r 31.65 7 18 21713619_21713614, 21713613_21713607, 21713536_21713529, 21713353_21713346, 21713208_21713203, 21713195_21713190, 21713177_21713172 UCCCAG, CUACUCG, CACUCCAG, CAACAUAG, CCACUG, CCUAAG, ACCCCG
292_12745400 gi|224514625|re_r 31.60 6 8 18989579_18989574, 18989573_18989567, 18989502_18989497, 18989496_18989489, 18989472_18989467, 18989397_18989392 UCCCAG, CUACUCG, CCACUG, CACUCCAG, ACCCCG, CUCCAG
163_320884 gi|224514941|re 31.50 6 12 1105861_1105868, 1105873_1105878, 1105940_1105945, 1105946_1105952, 1106023_1106030, 1106096_1106101 CAACAUAG, ACCCCG, UCCCAG, CUACUCG, CACUCCAG, UCCAUG
435_7268953 gi|224514841|re 31.48 6 11 38624195_38624200, 38624280_38624286, 38624323_38624330, 38624335_38624340, 38624423_38624428, 38624429_38624436 UCCCAG, CACUAAG, ACCACCAG, CCUAAG, CCACUG, CACUCCAG
361_11984939 gi|224515018|re 31.46 6 7 57674719_57674724, 57674725_57674731, 57674775_57674780, 57674790_57674795, 57674796_57674801, 57674802_57674809 UCCCAG, CUACUCG, CUCCAG, AUCUCG, CCACUG, CACUCCAG
449_209891 gi|224514812|re 31.39 5 12 941364_941370, 941376_941385, 941407_941414, 941507_941512, 941527_941534 CACUAAG, CAUCAAUAUG, ACCACCAG, CCACUG, CAACAUAG
31_314194 gi|224514980|re 31.30 5 12 1672599_1672604, 1672684_1672690, 1672739_1672744, 1672783_1672794, 1672829_1672834 UCCCAG, CACUAAG, CCUAAG, UCAAAACUCCCG, CCACUG
623_128387 gi|224514809|re 31.30 5 12 595631_595636, 595716_595722, 595759_595764, 595801_595812, 595847_595852 UCCCAG, CACUAAG, CCUAAG, UCAAAACUCCCG, CCACUG
56_6243983 gi|224514932|re_r 31.25 6 11 8091092_8091085, 8091080_8091075, 8091022_8091017, 8091016_8091010, 8090945_8090940, 8090939_8090932 CAACAUAG, ACCCCG, UCCCAG, CUACUCG, CCACUG, CACUCCAG
134_2334801 gi|37544901|ref_r 31.24 6 10 13623593_13623588, 13623562_13623555, 13623489_13623484, 13623483_13623477, 13623412_13623407, 13623406_13623399 CCUAAG, CAACAUAG, UCCCAG, CUACUCG, CCACUG, CACUCCAG
157_1098862 gi|224514936|re 31.24 6 10 5113339_5113344, 5113345_5113352, 5113410_5113415, 5113416_5113422, 5113487_5113492, 5113493_5113500 CCUAAG, CAACAUAG, UCCCAG, CUACUCG, CCACUG, CACUCCAG
416_3358436 gi|224514970|re_r 31.17 5 9 30672227_30672218, 30672213_30672208, 30672184_30672179, 30672096_30672091, 30672090_30672083, 30672076_30672069 CAUCAAUAUG, CCACUG, CCUAAG, CCACUG, CACUCCAG, CAACAUAG
163_5011903 gi|224514941|re 31.10 6 11 21473707_21473714, 21473719_21473724, 21473777_21473782, 21473855_21473860, 21473861_21473868, 21473968_21473973 CAACAUAG, ACCCCG, UCCCAG, CCACUG, CACUCCAG, AUCUCG
239_2097365 gi|224514626|re 31.04 6 11 8566087_8566092, 8566093_8566099, 8566164_8566169, 8566170_8566177, 8566251_8566258, 8566341_8566346 UCCCAG, CUACUCG, CCACUG, CACUCCAG, CACACCAG, ACCCCG
440_8138631 gi|224514859|re_r 30.97 6 9 9304676_9304671, 9304670_9304664, 9304599_9304594, 9304593_9304586, 9304534_9304529, 9304528_9304523 UCCCAG, CUACUCG, CCACUG, CACUCCAG, UCCAUG, CCUAAG
241_5774105 gi|224514627|re 30.84 6 10 24211432_24211437, 24211457_24211464, 24211528_24211533, 24211534_24211540, 24211605_24211610, 24211611_24211618 UCCAUG, CAACAUAG, UCCCAG, CUACUCG, CCACUG, CACUCCAG
144_10164427 gi|224514933|re_r 30.83 6 11 40647801_40647796, 40647788_40647783, 40647722_40647715, 40647710_40647705, 40647654_40647649, 40647577_40647572, 40647571_40647564 UCCAUG, UCCCAG, CAACAUAG, ACCCCG, UCCCAG, CCACUG, CACUCCAG
365_3680633 gi|224514994|re 30.83 4 6 19846724_19846729, 19846822_19846831, 19846835_19846842, 19846853_19846860 UCCCAG, CAUCAAUAUG, ACCUCCCG, ACCACCAG
447_7164916 gi|224514692|re 30.55 6 10 35802980_35802985, 35803015_35803022, 35803093_35803098, 35803099_35803105, 35803170_35803175, 35803178_35803183 CCUAAG, CAACAUAG, UCCCAG, CUACUCG, CCACUG, CUCCAG
106_2777226 gi|224514709|re_r 30.52 6 17 880817_880812, 880731_880725, 880719_880710, 880689_880682, 880591_880586, 880585_880578 UCCCAG, CACUAAG, CAUCAAUAUG, ACCACCAG, CCACUG, CACUCCAG
291_16204302 gi|224514625|re 30.51 4 5 83724187_83724198, 83724233_83724238, 83724239_83724246, 83724253_83724260 UCAAAACUCCCG, CCACUG, CACUCCAG, CAACAUAG
240_3041904 gi|224514626|re_r 30.44 6 14 2889844_2889838, 2889801_2889794, 2889789_2889784, 2889706_2889701, 2889686_2889679, 2889656_2889651 CACUAAG, ACCACCAG, CCUAAG, CCACUG, CAACAUAG, UCCCAG
585_336634 gi|224514697|re 30.44 6 14 1748585_1748590, 1748671_1748677, 1748714_1748721, 1748726_1748731, 1748814_1748819, 1748834_1748841 UCCCAG, CACUAAG, ACCACCAG, CCUAAG, CCACUG, CAACAUAG
448_8139381 gi|224514692|re_r 30.28 5 5 36487524_36487519, 36487518_36487512, 36487483_36487478, 36487448_36487441, 36487440_36487433 UCCCAG, CUACUCG, CCUAAG, CACCACAG, CACUCCAG

Oligonucleotide-RNA matrix
  RNA 143_5933299 144_12035002 144_12036845 491_1863337 361_3308216 362_3881965 435_5146560 448_9289486 277_1422701 314_4009805 131_4589305 314_2690741 533_15572 241_2788575 396_12776619 354_6441298 240_1722910 239_1464873 177_539227 281_9794982 181_1019428 31_6506552 413_2764719 368_517098 239_1465940 183_5408882 309_683915 354_6408185 163_2152544 313_2713186 478_8711130 447_7138128 167_8435263 531_10782997 158_2272405 395_877034 10_1505547 11_13718582 477_6473595 432_7962829 491_4174516 10_1375800 505_57449 507_31339 520_22439 183_5367893 440_8830206 183_6545077 281_5655774 432_7064712 500_107424 509_20049 365_6994902 68_12491256 167_2705214 281_8388693 392_336609 532_1005293 184_3367842 354_6766128 532_428540 289_529123 587_4357323 103_10949788 7_1595439 104_2621938 167_4296859 132_1470529 10_695792 313_1794709 578_1599607 433_5251579 144_1179053 157_1264172 364_3246802 184_8347636 242_2321348 292_12745400 163_320884 435_7268953 361_11984939 449_209891 31_314194 623_128387 56_6243983 134_2334801 157_1098862 416_3358436 163_5011903 239_2097365 440_8138631 241_5774105 144_10164427 365_3680633 447_7164916 106_2777226 291_16204302 240_3041904 585_336634 448_8139381
  rank 1 1 3 4 5 6 7 8 9 9 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 40 42 43 43 43 46 47 48 49 50 51 51 53 54 55 56 57 58 59 59 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 76 78 79 80 81 82 83 83 85 86 86 88 89 90 91 92 93 93 95 96 97 98 98 100
  score 92.43 92.43 76.16 67.70 66.70 48.87 48.12 46.39 46.10 46.10 45.19 44.75 44.10 43.53 42.96 42.81 42.15 41.44 41.13 41.06 40.92 40.75 40.15 39.69 39.44 39.35 39.33 39.18 38.99 38.85 38.84 38.32 37.80 37.78 37.04 36.75 36.65 36.35 36.23 35.87 35.87 35.75 35.14 35.14 35.14 34.82 34.58 34.52 34.25 34.24 34.14 34.14 34.13 33.92 33.64 33.58 33.56 33.24 33.06 33.06 32.98 32.92 32.90 32.82 32.76 32.75 32.14 32.12 32.06 32.01 32.00 31.92 31.79 31.77 31.70 31.65 31.65 31.60 31.50 31.48 31.46 31.39 31.30 31.30 31.25 31.24 31.24 31.17 31.10 31.04 30.97 30.84 30.83 30.83 30.55 30.52 30.51 30.44 30.44 30.28
  length 267 267 257 195 195 439 109 234 147 235 378 149 148 171 176 255 254 324 257 240 319 241 156 161 328 167 360 266 256 248 242 212 161 399 138 259 134 189 147 147 146 241 247 247 247 251 250 240 173 258 247 247 49 152 160 249 163 161 212 265 180 170 194 255 139 257 243 181 248 147 144 159 174 61 161 308 448 188 241 242 91 171 236 222 161 195 162 159 267 260 154 187 238 137 204 240 74 194 257 92
oligonucleotide q#                                                                                                                                                                                                        
CCUAAG 9,20 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 0 1 0 0 1 1 0 1 1 1 0 0 1 0 0 0 1 0 0 1 1 1
CAUCAAUAUG 31 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 0 1 1 1 1 0 1 1 1 1 0 0 0 1 0 0 1 1 1 1 0 1 1 1 1 1 1 0 0 1 1 1 1 0 1 0 0 1 1 0 1 0 1 1 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 0
UCAAAACUCCCG 21 1 1 1 1 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
UCCCAG 15,16,95 1 1 1 1 1 1 0 1 1 1 1 0 1 0 0 1 1 1 1 1 1 0 0 0 1 0 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 0 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 2 1 1 1 0 1 1 1
CUACUCG 6 1 1 1 1 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 0 1 0 0 0 0 1 1 1 1 1 0 1 0 0 0 1 1 1 0 0 1 1 1 0 0 1 0 0 0 0 1
ACCUCCCG 13 1 1 1 1 1 0 1 1 1 1 0 1 1 0 1 1 0 0 0 1 1 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
ACCACCAG 41 1 1 1 1 1 0 0 1 1 0 1 1 1 1 0 1 0 1 0 0 0 0 1 1 1 1 1 0 1 0 1 1 1 0 1 1 0 0 1 1 1 1 1 1 1 0 0 1 0 1 1 1 1 1 0 1 0 0 1 1 0 1 0 0 0 1 1 0 1 0 0 1 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 1 0
CCACUG 5,37 1 1 1 0 0 1 0 1 0 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 0 0 2 1 0 0 1 0 1 2 0 1 1 1 0 0 0 1 0 0 0 1 1 1 1 0 0 0 0 1 1 0 1 1 1 1 1 1 0 1 1 1 0 0 1 0 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 0
CAACAUAG 22 1 1 1 0 0 1 0 0 0 0 1 0 0 1 1 1 1 1 1 0 1 0 1 1 1 1 0 0 1 0 0 1 0 0 1 1 1 1 0 0 0 1 1 1 1 1 1 0 1 0 1 1 0 1 0 1 1 1 0 0 0 1 1 1 0 1 0 0 0 0 0 1 1 0 1 1 1 0 1 0 0 1 0 0 1 1 1 1 1 0 0 1 1 0 1 0 1 1 1 0
CACUCCAG 40,49 1 1 1 0 0 2 0 0 0 0 1 0 0 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 0 0 0 1 0 0 0 0 1 1 1 0 0 0 0 0 1 1 0 1 1 1 1 0 1 0 1 1 1 0 1 0 0 0 1 0 1 1 1 1 1 1 1 0 0 0 1 1 1 1 1 1 1 1 1 0 0 1 1 0 0 1
CACUAAG 101 1 1 0 1 1 0 1 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 0 0 0 0 0 0 0 1 1 0 1 0 1 1 1 1 1 1 1 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 1 1 0 0 0 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0
ACCCCG 39 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0
UCCAUG 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0
CUCCAG 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
AUCUCG 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
CACACCAG 41,46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
CACCACAG 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1


MS/MS ion search

Matched nucleotide list(overall)
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